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1.
Infect Genet Evol ; 92: 104896, 2021 08.
Article in English | MEDLINE | ID: covidwho-1220964

ABSTRACT

A Monte Carlo simulation in a novel approach is used for studying the problem of the outbreak and spread dynamics of the new COVID-19 pandemic in this work. In particular, our goal was to generate epidemiological data based on natural mechanism of transmission of this disease assuming random interactions of a large-finite number of individuals in very short distance ranges. In the simulation we also take into account the stochastic character of the individuals in a finite population and given densities of people. On the other hand, we include in the simulation the appropriate statistical distributions for the parameters characterizing this disease. An important outcome of our work, besides the generated epidemic curves, is the methodology of determining the effective reproductive number during the main part of the daily new cases of the epidemic. Since this quantity constitutes a fundamental parameter of the SIR-based epidemic models, we also studied how it is affected by small variations of the incubation time and the crucial distance distributions, and furthermore, by the degree of quarantine measures. In addition, we compare our qualitative results with those of selected real epidemiological data.


Subject(s)
COVID-19/epidemiology , COVID-19/transmission , Computer Simulation , SARS-CoV-2 , Humans , Models, Biological , Monte Carlo Method
2.
Infect Genet Evol ; 87: 104668, 2021 01.
Article in English | MEDLINE | ID: covidwho-963228

ABSTRACT

We scrutinize the evolution of COVID-19 in Madagascar by comparing results from three approaches (cubic polynomial, semi-gaussian and gaussian-like models) which we use to provide an analytical form of the spread of the pandemic. In so doing, we introduce (for the first time) the ratio ℜI/Tc,d of the cumulative and daily numbers of infected persons over the corresponding one of tests which are expected to be less sensitive to the number of the tests because the credibility of the results based only on the absolute numbers often raises some criticisms. We also give and compare the effective reproduction number Reff from different approaches and with the ones of some European countries with a small number of population (Greece, Switzerland) and some other African countries. Finally, we show and comment the evolution of the total number of deaths and of the per cent number of cured persons and discuss the performance of the medical care.


Subject(s)
COVID-19/epidemiology , Models, Statistical , COVID-19/transmission , COVID-19/virology , Humans , Madagascar/epidemiology , Pandemics , SARS-CoV-2/isolation & purification
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